If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ), 'gf_id' => 'HOM05D000917', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000917' ), 'data_identifier' => 'HOM05D000917', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000917', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20110' => 'bna', 'A06p48300' => 'bna', 'A07p41190' => 'bna', 'A09p19520' => 'bna', 'Aa31LG2G12310' => 'aar', 'Aa31LG3G570' => 'aar', 'Aa31LG9G12630' => 'aar', 'Aa31sc115G40' => 'aar', 'Aa31sc115G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2873' => 'aag', 'Actinidia05759' => 'ach', 'Actinidia08728' => 'ach', 'Actinidia15410' => 'ach', 'Actinidia24242' => 'ach', 'Actinidia24243' => 'ach', 'Actinidia24244' => 'ach', 'Actinidia24245' => 'ach', 'Actinidia30917' => 'ach', 'Actinidia30918' => 'ach', 'Actinidia36921' => 'ach', 'Ah.05g168130' => 'amhyb', 'Ah.06g192670' => 'amhyb', 'Ah.08g223340' => 'amhyb', 'AL1G64900' => 'aly', 'AL2G35640' => 'aly', 'AL8G18770' => 'aly', 'Aqoxy1G00694' => 'aox', 'Aqoxy2G03390' => 'aox', 'Aqoxy3G02524' => 'aox', 'Aqoxy5G00471' => 'aox', 'Aqoxy5G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J4WVY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGC1S7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0X6M7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1QK2' => 'arhy', 'AT1G54490' => 'ath', 'AT1G75660' => 'ath', 'AT5G42540' => 'ath', 'ATR0074G003' => 'atr', 'ATR0577G001' => 'atr', 'ATR0626G248' => 'atr', 'ATR0626G370' => 'atr', 'ATR0685G001' => 'atr', 'ATR0697G262' => 'atr', 'ATR0867G001' => 'atr', 'ATR0955G006' => 'atr', 'ATR0996G006' => 'atr', 'Atru.chr12.2055' => 'acertr', 'Atru.chr13.317' => 'acertr', 'Atru.chr2.716' => 'acertr', 'AUR62000967' => 'cqu', 'AUR62001541' => 'cqu', 'AUR62004998' => 'cqu', 'AUR62020242' => 'cqu', 'AUR62026673' => 'cqu', 'AUR62040580' => 'cqu', 'BcaB05g24928' => 'bca', 'BcaB07g31089' => 'bca', 'BcaB07g31091' => 'bca', 'BcaC02g10767' => 'bca', 'BcaC03g15606' => 'bca', 'BcaC04g22010' => 'bca', 'BcaC06g31755' => 'bca', 'BcaC07g37647' => 'bca', 'BcaC08g47056' => 'bca', 'BcaNung05777' => 'bca', 'BolC2t09322H' => 'bol', 'BolC4t24040H' => 'bol', 'BolC6t39999H' => 'bol', 'BolC9t55379H' => 'bol', 'BraA02t07046Z' => 'bra', 'BraA06t27699Z' => 'bra', 'BraA07t31654Z' => 'bra', 'BraA09t37567Z' => 'bra', 'C02p33820' => 'bna', 'C04p25340' => 'bna', 'C06p49610' => 'bna', 'C09p24840' => 'bna', 'CAN.G131.4' => 'can', 'CAN.G1925.7' => 'can', 'CAN.G311.9' => 'can', 'CAN.G421.1' => 'can', 'CANSAT35G1375' => 'cansat', 'CANSAT54G2535' => 'cansat', 'CARHR055590' => 'chi', 'CARHR069050' => 'chi', 'CARHR181830' => 'chi', 'CARHR249560' => 'chi', 'Carub.0002s0935' => 'cru', 'Carub.0002s2249' => 'cru', 'Carub.0008s0648' => 'cru', 'Ca_09402_v3' => 'car', 'Ca_10062_v3' => 'car', 'Ca_13409_v3' => 'car', 'Ca_19461_v3' => 'car', 'Ca_29922_v3' => 'car', 'Ca_30165_v3' => 'car', 'CBR_g311' => 'cbr', 'Cc01_g08590' => 'ccan', 'Cc02_g00490' => 'ccan', 'Cc02_g00500' => 'ccan', 'Cc02_g31410' => 'ccan', 'Cc10_g01840' => 'ccan', 'CDE02G2961' => 'cde', 'CDE02G4779' => 'cde', 'CDE04G2188' => 'cde', 'CDE04G2849' => 'cde', 'CDE05G0484' => 'cde', 'CDE05G1796' => 'cde', 'CDE05G1982' => 'cde', 'CDE05G2013' => 'cde', 'CDE05G2749' => 'cde', 'Cfa006473' => 'cfa', 'Cfa009950' => 'cfa', 'Cfa009951' => 'cfa', 'Cfa009964' => 'cfa', 'Cfa010377' => 'cfa', 'Cfa013934' => 'cfa', 'Cfa023434' => 'cfa', 'Cfa023549' => 'cfa', 'Ciclev10000087m.g' => 'ccl', 'Ciclev10000168m.g' => 'ccl', 'CiPaw.03G190400' => 'cil', 'CiPaw.07G007300' => 'cil', 'CiPaw.07G151800' => 'cil', 'CiPaw.08G065200' => 'cil', 'CiPaw.08G178600' => 'cil', 'CiPaw.13G131200' => 'cil', 'ClCG02G016360' => 'cla', 'ClCG09G021910' => 'cla', 'COL.COLO4_03814' => 'col', 'COL.COLO4_15267' => 'col', 'COL.COLO4_22659' => 'col', 'COL.COLO4_26163' => 'col', 'COL.COLO4_26164' => 'col', 'COL.COLO4_30174' => 'col', 'COL.COLO4_36864' => 'col', 'Cpa.g.c32689' => 'cpa', 'Cpa.g.c35564' => 'cpa', 'Cpa.g.c37284' => 'cpa', 'Cpa.g.sc1059.1' => 'cpa', 'Cpa.g.sc117.62' => 'cpa', 'Cpa.g.sc183.1' => 'cpa', 'Cpa.g.sc183.2' => 'cpa', 'Cpa.g.sc26.32' => 'cpa', 'Cpa.g.sc264.19' => 'cpa', 'Cpa.g.sc76.57' => 'cpa', 'Cpa.g.sc76.58' => 'cpa', 'Cpa.g.sc76.59' => 'cpa', 'Cre03.g152100' => 'cre', 'Cre06.g280050' => 'cre', 'Cre08.g373916' => 'cre', 'Cre16.g679900' => 'cre', 'CsaV3_2G004370' => 'csa', 'CsaV3_5G025260' => 'csa', 'CSS0005383' => 'camsi', 'CSS0005900' => 'camsi', 'CSS0011511' => 'camsi', 'CSS0013252' => 'camsi', 'CSS0019829' => 'camsi', 'CSS0021338' => 'camsi', 'CSS0030140' => 'camsi', 'CSS0031470' => 'camsi', 'CSS0033343' => 'camsi', 'CSS0034905' => 'camsi', 'CSS0037043' => 'camsi', 'CSS0041372' => 'camsi', 'CSS0044441' => 'camsi', 'CSS0046893' => 'camsi', 'CSS0049909' => 'camsi', 'DCAR_000125' => 'dca', 'DCAR_001928' => 'dca', 'DCAR_005748' => 'dca', 'DCAR_005749' => 'dca', 'DCAR_006179' => 'dca', 'DCAR_006180' => 'dca', 'DCAR_013859' => 'dca', 'DCAR_017477' => 'dca', 'Dinv08134' => 'din', 'Dinv11573' => 'din', 'Dinv11574' => 'din', 'Dinv29182' => 'din', 'Dinv31829' => 'din', 'Duzib041G0621' => 'dzi', 'Duzib093G1078' => 'dzi', 'Duzib168G2090' => 'dzi', 'Duzib177G0650' => 'dzi', 'ECA234G2775' => 'eca', 'ECA238G2273' => 'eca', 'ECA238G3529' => 'eca', 'ECA246G2463' => 'eca', 'EL10Ac1g01590' => 'bvu', 'EL10Ac4g09193' => 'bvu', 'EL10Ac7g16316' => 'bvu', 'EL10Ac7g16317' => 'bvu', 'Eucgr.F01638' => 'egr', 'Eucgr.H04389' => 'egr', 'FAN01G1256' => 'fan', 'FAN02G1568' => 'fan', 'FAN03G1968' => 'fan', 'FAN05G0110' => 'fan', 'FAN05G5013' => 'fan', 'FAN06G1806' => 'fan', 'FAN06G4976' => 'fan', 'FAN08G2884' => 'fan', 'FAN09G4119' => 'fan', 'FAN10G0837' => 'fan', 'FAN10G1250' => 'fan', 'FAN14G2821' => 'fan', 'FAN15G1164' => 'fan', 'FAN18G4050' => 'fan', 'FAN20G1441' => 'fan', 'FAN27G3184' => 'fan', 'FvH4_2g38700' => 'fve', 'FvH4_5g21470' => 'fve', 'FvH4_6g03690' => 'fve', 'FvH4_6g52700' => 'fve', 'FvH4_7g18720' => 'fve', 'Glyma.03G245000' => 'gma', 'Glyma.10G159900' => 'gma', 'Glyma.11G179950' => 'gma', 'Glyma.11G180000' => 'gma', 'Glyma.12G093500' => 'gma', 'Glyma.12G093533' => 'gma', 'Glyma.14G218000' => 'gma', 'Glyma.15G147100' => 'gma', 'Glyma.17G257100' => 'gma', 'Glyma.19G242400' => 'gma', 'Glyma.20G228700' => 'gma', 'Gohir.A05G187400' => 'ghi', 'Gohir.A05G257200' => 'ghi', 'Gohir.A11G256200' => 'ghi', 'Gohir.A13G105700' => 'ghi', 'Gohir.D04G064650' => 'ghi', 'Gohir.D05G190300' => 'ghi', 'Gohir.D05G258700' => 'ghi', 'Gohir.D06G117700' => 'ghi', 'Gohir.D11G265900' => 'ghi', 'Gohir.D12G073802' => 'ghi', 'Gohir.D13G108500' => 'ghi', 'Gohir.D13G223775' => 'ghi', 'Gohir.D13G226100' => 'ghi', 'Gohir.D13G226500' => 'ghi', 'Gorai.004G126600' => 'gra', 'Gorai.004G128600' => 'gra', 'Gorai.007G169800' => 'gra', 'Gorai.007G285900' => 'gra', 'Gorai.008G081600' => 'gra', 'Gorai.009G195600' => 'gra', 'Gorai.009G270300' => 'gra', 'Gorai.010G135400' => 'gra', 'Gorai.011G157100' => 'gra', 'Gorai.013G121900' => 'gra', 'Gorai.013G257000' => 'gra', 'Gorai.013G257500' => 'gra', 'Gorai.013G257600' => 'gra', 'GSVIVG01009879001' => 'vvi', 'GSVIVG01021865001' => 'vvi', 'GSVIVG01024465001' => 'vvi', 'GSVIVG01029930001' => 'vvi', 'GSVIVG01036052001' => 'vvi', 'HanXRQChr01g0004541' => 'han', 'HanXRQChr03g0092921' => 'han', 'HanXRQChr07g0189701' => 'han', 'HanXRQChr12g0379411' => 'han', 'HanXRQChr14g0430181' => 'han', 'HanXRQChr14g0445531' => 'han', 'HanXRQChr15g0471811' => 'han', 'Haze_04318' => 'cav', 'Haze_13562' => 'cav', 'Haze_13564' => 'cav', 'Haze_13565' => 'cav', 'Haze_22617' => 'cav', 'Haze_23317' => 'cav', 'Haze_23318' => 'cav', 'Haze_23319' => 'cav', 'Haze_23320' => 'cav', 'Haze_23321' => 'cav', 'Haze_23324' => 'cav', 'Haze_23325' => 'cav', 'Haze_26405' => 'cav', 'Haze_26779' => 'cav', 'Hma1.2p1_0638F.1_g193730' => 'hma', 'Hma1.2p1_0793F.1_g218620' => 'hma', 'HPP92_001526' => 'vpl', 'HPP92_009742' => 'vpl', 'HPP92_009771' => 'vpl', 'HPP92_009772' => 'vpl', 'HPP92_009773' => 'vpl', 'HPP92_012139' => 'vpl', 'HPP92_012140' => 'vpl', 'HPP92_025363' => 'vpl', 'Hund05196' => 'sun', 'Hund06989' => 'sun', 'Hund22107' => 'sun', 'Hund24102' => 'sun', 'Lalb_Chr01g0004981' => 'lal', 'Lalb_Chr14g0367591' => 'lal', 'Lalb_Chr14g0367611' => 'lal', 'Lalb_Chr14g0367621' => 'lal', 'Lalb_Chr14g0367631' => 'lal', 'Lalb_Chr15g0076931' => 'lal', 'Lalb_Chr18g0045121' => 'lal', 'Lalb_Chr21g0310871' => 'lal', 'Lalb_Chr22g0354381' => 'lal', 'Lalb_Chr24g0398741' => 'lal', 'Lj1A262G29' => 'lonja', 'Lj1A262T30' => 'lonja', 'Lj1A262T31' => 'lonja', 'Lj1g0002312' => 'lja', 'Lj1P262T26' => 'lonja', 'Lj3C890G15' => 'lonja', 'Lj3g0013540' => 'lja', 'Lj4A26G46' => 'lonja', 'Lj4C796G5' => 'lonja', 'Lj5g0016062' => 'lja', 'Lj5g0019009' => 'lja', 'Lj9A667G46' => 'lonja', 'Lj9A671G58' => 'lonja', 'Lsat_1_v5_gn_2_67861' => 'lsa', 'Lsat_1_v5_gn_2_8340' => 'lsa', 'Lsat_1_v5_gn_3_104380' => 'lsa', 'Lsat_1_v5_gn_3_126020' => 'lsa', 'Lsat_1_v5_gn_3_126060' => 'lsa', 'Lsat_1_v5_gn_4_108100' => 'lsa', 'Lsat_1_v5_gn_6_70980' => 'lsa', 'Lsat_1_v5_gn_6_79900' => 'lsa', 'Lsat_1_v5_gn_7_22361' => 'lsa', 'Manes.05G149100' => 'mes', 'Manes.08G127400' => 'mes', 'Manes.09G118800' => 'mes', 'Mapoly0105s0035' => 'mpo', 'MBI03_g21284_MAGBIO' => 'mbi', 'MBI04_g06617_MAGBIO' => 'mbi', 'MBI04_g31974_MAGBIO' => 'mbi', 'MBI05_g16177_MAGBIO' => 'mbi', 'MBI08_g05363_MAGBIO' => 'mbi', 'MBI09_g29151_MAGBIO' => 'mbi', 'MBI09_g29271_MAGBIO' => 'mbi', 'MBI09_g29274_MAGBIO' => 'mbi', 'MBI10_g26053_MAGBIO' => 'mbi', 'MBI11_g14742_MAGBIO' => 'mbi', 'MBI11_g31280_MAGBIO' => 'mbi', 'MBI13_g44203_MAGBIO' => 'mbi', 'MBI14_g31918_MAGBIO' => 'mbi', 'MBI14_g43733_MAGBIO' => 'mbi', 'MBI15_g13917_MAGBIO' => 'mbi', 'MBI15_g33085_MAGBIO' => 'mbi', 'MBI16_g26383_MAGBIO' => 'mbi', 'MBI17_g07026_MAGBIO' => 'mbi', 'MBI17_g19931_MAGBIO' => 'mbi', 'MBI17_g22144_MAGBIO' => 'mbi', 'MBI17_g22145_MAGBIO' => 'mbi', 'MBI17_g25806_MAGBIO' => 'mbi', 'MBI17_g25959_MAGBIO' => 'mbi', 'MBI17_g25960_MAGBIO' => 'mbi', 'MBI17_g25967_MAGBIO' => 'mbi', 'MBI17_g25969_MAGBIO' => 'mbi', 'MBI17_g25971_MAGBIO' => 'mbi', 'MBI17_g25972_MAGBIO' => 'mbi', 'MBI18_g09965_MAGBIO' => 'mbi', 'MBI18_g34930_MAGBIO' => 'mbi', 'MCO05G355' => 'mco', 'MCO11G694' => 'mco', 'MD00G1128400' => 'mdo', 'MD00G1128500' => 'mdo', 'MD04G1219200' => 'mdo', 'MD08G1014700' => 'mdo', 'MD11G1172900' => 'mdo', 'MD12G1236200' => 'mdo', 'MD15G1014000' => 'mdo', 'Medtr4g051920' => 'mtr', 'Medtr7g114570' => 'mtr', 'MELO3C002953.2' => 'cme', 'MELO3C004356.2' => 'cme', 'Migut.C00811' => 'egut', 'Migut.D02397' => 'egut', 'Migut.D02410' => 'egut', 'Migut.N01939' => 'egut', 'Migut.O00694' => 'egut', 'MSTRG.1204' => 'ama', 'MSTRG.21019' => 'ama', 'MSTRG.25234' => 'ama', 'MSTRG.26945' => 'ama', 'MSTRG.28012' => 'ama', 'Nitab4.5_0000011g0150' => 'nta', 'Nitab4.5_0000080g0220' => 'nta', 'Nitab4.5_0000080g0230' => 'nta', 'Nitab4.5_0000080g0240' => 'nta', 'Nitab4.5_0000192g0070' => 'nta', 'Nitab4.5_0000282g0080' => 'nta', 'Nitab4.5_0001988g0080' => 'nta', 'Nitab4.5_0002670g0010' => 'nta', 'Nitab4.5_0002950g0040' => 'nta', 'Nitab4.5_0002950g0050' => 'nta', 'Nitab4.5_0004360g0080' => 'nta', 'Nitab4.5_0005126g0010' => 'nta', 'Nitab4.5_0005126g0020' => 'nta', 'Nitab4.5_0008231g0010' => 'nta', 'Nitab4.5_0021524g0010' => 'nta', 'Nn4g26315' => 'nnu', 'Nn4g26319' => 'nnu', 'Nn5g29327' => 'nnu', 'Nn6g32346' => 'nnu', 'Nn6g33688' => 'nnu', 'Nn6g34737' => 'nnu', 'Oeu007055.2' => 'oeu', 'Oeu007335.1' => 'oeu', 'Oeu012479.4' => 'oeu', 'Oeu023139.1' => 'oeu', 'Oeu025112.1' => 'oeu', 'Oeu027051.4' => 'oeu', 'Oeu032517.1' => 'oeu', 'Os01g0872700' => 'osa', 'Os02g0481900' => 'osa', 'Os03g0794800' => 'osa', 'Os07g0238700' => 'osa', 'Os11g0157000' => 'osa', 'Peaxi162Scf00064g00065' => 'pax', 'Peaxi162Scf00438g00049' => 'pax', 'Peaxi162Scf01156g00315' => 'pax', 'PGR004G0849' => 'pgr', 'PGR083G1001' => 'pgr', 'PGSC0003DMG400003725' => 'stu', 'Phvul.001G007900' => 'pvu', 'Phvul.003G280400' => 'pvu', 'Phvul.006G099200' => 'pvu', 'Phvul.007G185300' => 'pvu', 'Phvul.011G097800' => 'pvu', 'Potri.002G024100' => 'ptr', 'Potri.005G048900' => 'ptr', 'Potri.005G237500' => 'ptr', 'Potri.013G035600' => 'ptr', 'Potri.013G070200' => 'ptr', 'Pp3c14_10280' => 'ppa', 'Pp3c24_2160' => 'ppa', 'PRCOL_00000528' => 'pco', 'PRCOL_00003520' => 'pco', 'PRCOL_00003746' => 'pco', 'PRCOL_00004052' => 'pco', 'Prupe.1G367600' => 'ppe', 'Prupe.6G141200' => 'ppe', 'Prupe.6G338500' => 'ppe', 'Psat3g007000' => 'psa', 'Psat4g011000' => 'psa', 'Psat5g028920' => 'psa', 'Psat6g003680' => 'psa', 'Psat6g147360' => 'psa', 'Psat6g147400' => 'psa', 'Psat7g089080' => 'psa', 'Psat7g187120' => 'psa', 'PSO170G2341' => 'pso', 'PSO210G5752' => 'pso', 'PSO210G7244' => 'pso', 'PSO478G2069' => 'pso', 'PSO478G3549' => 'pso', 'PSO541G0541' => 'pso', 'PSO541G1877' => 'pso', 'PSO675G2904' => 'pso', 'PSO675G6048' => 'pso', 'PSO700G0073' => 'pso', 'PSO724G0915' => 'pso', 'PSO781G0270' => 'pso', 'PSO782G3740' => 'pso', 'PSO832G1120' => 'pso', 'PSO832G3912' => 'pso', 'QL01p011327' => 'qlo', 'QL02p011305' => 'qlo', 'QL03p022655' => 'qlo', 'QL09p026662' => 'qlo', 'QL09p026676' => 'qlo', 'RcHm_v2.0_Chr1g0334231' => 'rch', 'RcHm_v2.0_Chr3g0452231' => 'rch', 'RcHm_v2.0_Chr5g0009961' => 'rch', 'RcHm_v2.0_Chr5g0047421' => 'rch', 'RcHm_v2.0_Chr5g0047601' => 'rch', 'RcHm_v2.0_Chr5g0047631' => 'rch', 'RcHm_v2.0_Chr5g0047791' => 'rch', 'RcHm_v2.0_Chr5g0047991' => 'rch', 'RcHm_v2.0_Chr6g0302611' => 'rch', 'Rhsim03G0219100' => 'rsi', 'Rhsim05G0205200' => 'rsi', 'Rhsim06G0022800' => 'rsi', 'Rhsim07G0176100' => 'rsi', 'Rhsim07G0246300' => 'rsi', 'Rhsim13G0225900' => 'rsi', 'Sabra01G0107300' => 'sbr', 'Sabra02G0019700' => 'sbr', 'Sabra02G0133900' => 'sbr', 'Sabra05G0044200' => 'sbr', 'Sabra05G0183600' => 'sbr', 'Sabra13G0034900' => 'sbr', 'Sabra13G0060900' => 'sbr', 'SalBow4G0538' => 'sbo', 'SalBow6G4640' => 'sbo', 'SalBow6G6826' => 'sbo', 'Sc02g0008510' => 'sci', 'Sc20g0000190' => 'sci', 'Sed0001153' => 'sed', 'Sed0009325' => 'sed', 'Sed0010375' => 'sed', 'SEGI_00933' => 'sgi', 'SEGI_02664' => 'sgi', 'SEGI_09583' => 'sgi', 'SEGI_29578' => 'sgi', 'SGA_v2.0_scaffold196G40963' => 'sas', 'SGA_v2.0_scaffold22G09790' => 'sas', 'SGA_v2.0_scaffold92G28246' => 'sas', 'SHI08078' => 'shi', 'SHI08163' => 'shi', 'SHI10673' => 'shi', 'SHI12135' => 'shi', 'SHI15835' => 'shi', 'SHI16022' => 'shi', 'SHI16220' => 'shi', 'SHI18343' => 'shi', 'SHI18344' => 'shi', 'SHI18345' => 'shi', 'SHI18411' => 'shi', 'SHI18419' => 'shi', 'SHI21916' => 'shi', 'SHI23601' => 'shi', 'SHI24262' => 'shi', 'SHI24791' => 'shi', 'SHI24792' => 'shi', 'SHI25156' => 'shi', 'SHI29332' => 'shi', 'SHI29333' => 'shi', 'SHI29339' => 'shi', 'SHI29846' => 'shi', 'SHI30990' => 'shi', 'SHI30991' => 'shi', 'SHI30992' => 'shi', 'SHI31208' => 'shi', 'SHI31209' => 'shi', 'SHI31210' => 'shi', 'SHI31759' => 'shi', 'SHI33443' => 'shi', 'SHI33511' => 'shi', 'SHI35009' => 'shi', 'SHI35676' => 'shi', 'SHI35677' => 'shi', 'SHI35678' => 'shi', 'SHI35679' => 'shi', 'SHI35680' => 'shi', 'SHI36246' => 'shi', 'SHI36247' => 'shi', 'SHI36248' => 'shi', 'SHI38391' => 'shi', 'SHI38392' => 'shi', 'SHI38451' => 'shi', 'SHI38452' => 'shi', 'SHI39658' => 'shi', 'SHI40045' => 'shi', 'SHI40689' => 'shi', 'SHI40690' => 'shi', 'SHI41751' => 'shi', 'SHI42370' => 'shi', 'SHI42670' => 'shi', 'SHI42768' => 'shi', 'SHI42884' => 'shi', 'SHI42885' => 'shi', 'SHI43519' => 'shi', 'SHI45542' => 'shi', 'SHI45543' => 'shi', 'SHI46713' => 'shi', 'SHI47501' => 'shi', 'SHI47966' => 'shi', 'SHI50003' => 'shi', 'SHI50467' => 'shi', 'SHI51169' => 'shi', 'SHI52104' => 'shi', 'SHI54412' => 'shi', 'SHI54419' => 'shi', 'SHI54431' => 'shi', 'SHI54472' => 'shi', 'SHI54550' => 'shi', 'SHI54559' => 'shi', 'SHI54569' => 'shi', 'SHI54657' => 'shi', 'SHI54670' => 'shi', 'SHI54741' => 'shi', 'SMO137G0256' => 'smo', 'Solyc04g049010.3' => 'sly', 'Solyc04g081280.3' => 'sly', 'Solyc12g089280.2' => 'sly', 'Sopen04g018450' => 'spe', 'Sopen04g034900' => 'spe', 'Sopen12g031150' => 'spe', 'Sp1g12700' => 'spa', 'Sp5g30760' => 'spa', 'SpUn0001_0730' => 'spa', 'TAR375G0801' => 'tar', 'TAR381G0010' => 'tar', 'TAR381G1266' => 'tar', 'TAR623G1026' => 'tar', 'TAR623G1649' => 'tar', 'TAR625G1374' => 'tar', 'TAR625G1417' => 'tar', 'TAR636G0598' => 'tar', 'TAR636G1918' => 'tar', 'THA.LOC104805813' => 'tha', 'THA.LOC104808440' => 'tha', 'THA.LOC104809408' => 'tha', 'THA.LOC104811387' => 'tha', 'THA.LOC104813193' => 'tha', 'THA.LOC104818437' => 'tha', 'Thecc.03G050800' => 'tca', 'Thecc.03G050900' => 'tca', 'Thecc.03G051000' => 'tca', 'Thecc.05G289800' => 'tca', 'Thecc.08G042300' => 'tca', 'Thhalv10009553m.g' => 'esa', 'Thhalv10018062m.g' => 'esa', 'Thhalv10023239m.g' => 'esa', 'TPR.G11137' => 'tpr', 'TPR.G17222' => 'tpr', 'TPR.G18944' => 'tpr', 'TPR.G34371' => 'tpr', 'TPR.G38144' => 'tpr', 'TPR.G39517' => 'tpr', 'TPR.G39537' => 'tpr', 'TPR.G39794' => 'tpr', 'TPR.G4606' => 'tpr', 'TPR.G4659' => 'tpr', 'TPR.G5327' => 'tpr', 'TPR.G6878' => 'tpr', 'TPR.G7005' => 'tpr', 'TPR.G7124' => 'tpr', 'TPR.G873' => 'tpr', 'TWI36G0418' => 'twi', 'TWI36G0557' => 'twi', 'TWI56G1011' => 'twi', 'unitig_37.g13021' => 'ugi', 'unitig_37.g13022' => 'ugi', 'unitig_578.g16094' => 'ugi', 'unitig_578.g16760' => 'ugi', 'vmacro04162' => 'vma', 'vmacro04341' => 'vma', 'vmacro04342' => 'vma', 'vmacro05067' => 'vma', 'vmacro06482' => 'vma', 'vmacro20233' => 'vma', 'vmacro21716' => 'vma', 'VMungo0251G2960' => 'vmu', 'VMungo0540G0720' => 'vmu', 'VMungo0647G2420' => 'vmu', 'VMungo0720G1922' => 'vmu', 'VMungo1127G1162' => 'vmu', 'Zm00001eb127930' => 'zma', 'Zm00001eb171750' => 'zma', 'Zm00001eb197550' => 'zma', 'Zm00001eb213060' => 'zma', 'Zm00001eb342880' => 'zma', 'Zm00001eb427030' => 'zma' ) $gf_id = 'HOM05D000917' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000917' ) $data_identifier = 'HOM05D000917' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 4, 'ath' => (int) 3, 'atr' => (int) 9, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 4, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 8, 'ccl' => (int) 2, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 7, 'cpa' => (int) 12, 'cre' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 2, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 3, 'mpo' => (int) 1, 'mbi' => (int) 30, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 2, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 2, 'stu' => (int) 1, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 2, 'pco' => (int) 4, 'ppe' => (int) 3, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 74, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 15, 'twi' => (int) 3, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427030' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1